Hauptseminar Multiscale Simulations SS 2016/Ion transport through nanopores via atomistic simulations
From ICPWiki
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- Date
- tba"tba" contains an extrinsic dash or other characters that are invalid for a date interpretation.
- Topic
- Ion transport through nanopores via atomistic simulations
- Speaker
- tba
- Tutor
- Florian Weik
Contents
- Overview over nanopores and sensing applications.
- DNA pore blockage experiments by Smeets. et. al. and relation to DNA sequencing
- Infinite cylinder model and introduction of Poisson-Boltzmann (PB) theory and Stokes flow
- Atomitic description of the system
- Force fields
- Model
- Results and comparison to PB theory.
Literature
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C. Dekker.
"Solid-state nanopores".
Nature Nanotech
2(209–215), 2007.
[PDF] (871 KB)
[DOI]
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Howorka, Stefan and Siwy, Zuzanna.
"Nanopore analytics: sensing of single molecules".
Chemical Society Reviews
38(8)(2360–2384), 2009.
[DOI]
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Venkatesan, B.M. and Bashir, R..
"Nanopore sensors for nucleic acid analysis".
Nature Nanotechnology
6(10)(615–624), 2011.
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Miles, BN and Ivanov, AP and Wilson, KA and Dogan, F and Japrung, D and Edel, JB.
"Single molecule sensing with solid-state nanopores: novel materials, methods, and applications".
Chemical Society Reviews
42(15–28), 2013.
[DOI]
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Kesselheim, Stefan and Müller, Wojciech and Holm, Christian.
"Origin of Current Blockades in Nanopore Translocation Experiments".
Physical Review Letters
112(018101), 2014.
[PDF] (351 KB)
[DOI]
[URL]
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Stefan Kesselheim.
"Simulations of DNA Translocation through nanopores".
PhD thesis, Universitaet Stuttgart, 2014.
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Ralph M. M. Smeets and Ulrich F. Keyser and Diego Krapf and Meng-Yue Wu and Nynke H. Dekker and Cees Dekker.
"Salt dependence of ion transport and DNA translocation through solid-state nanopores".
Nano Letters
6(89–95), 2006.
[PDF] (993 KB)
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Markus Deserno and Christian Holm and Jürgen Blaul and Matthias Ballauff and Matthias Rehahn.
"The Osmotic Coefficient of Rod-like Polyelectrolytes: Computer Simulation, Analytical Theory, and Experiment".
European Physical Journal E
5(97–103), 2001.
[PDF] (147 KB)
[DOI]