Difference between revisions of "Michael Kuron"
| Line 1: | Line 1: | ||
{{Person | {{Person | ||
|name=Kuron, Michael | |name=Kuron, Michael | ||
| − | |status= | + | |status=PhD student |
|phone=67715 | |phone=67715 | ||
|room=1.041 | |room=1.041 | ||
| Line 12: | Line 12: | ||
}} | }} | ||
| − | I am a | + | I am a PhD student in [[Christian Holm]]'s group, working on lattice-Boltzmann simulations of cooperative behavior of active particles. |
| − | |||
| − | |||
=== Publications === | === Publications === | ||
<bibentry>kuron15a</bibentry> | <bibentry>kuron15a</bibentry> | ||
| + | |||
| + | === Master's Thesis === | ||
| + | {{Download|MSc_Thesis_Kuron.pdf|"Efficient Lattice Boltzmann Algorithms for Colloids Undergoing Electrophoresis"}}, 2015, Institute for Computational Physics, Stuttgart | ||
| + | (Download will be available within the next few months) | ||
| + | |||
| + | For this thesis, [http://www.walberla.net waLBerla], a highly-scalable grid framework for applications such as lattice-Boltzmann and solving partial differential equations, was extended so that it can be used for simulations of electrokinetics and active colloids. | ||
=== Bachelor Thesis === | === Bachelor Thesis === | ||
| Line 27: | Line 31: | ||
These simulations show that charge discretization and phase shifts between DNA molecules, modeled as rods, have a significant influence on their attractive properties, an effect that previous works disregarded as it was computationally too expensive, even though it turns out to be too large to neglect for realistic results. | These simulations show that charge discretization and phase shifts between DNA molecules, modeled as rods, have a significant influence on their attractive properties, an effect that previous works disregarded as it was computationally too expensive, even though it turns out to be too large to neglect for realistic results. | ||
Curling up the discretely charged rods into helices, thus making the most accurate model of DNA that could be simulated with the limits of time and resources for this thesis, reveals further geometry dependencies and again a strong influence of a phase shift between the two helices. For phase shifts of 180°, the results for the continuous rods are mostly recovered for large Bjerrum lengths, but for any other phase shift, the forces are weaker, albeit still attractive. | Curling up the discretely charged rods into helices, thus making the most accurate model of DNA that could be simulated with the limits of time and resources for this thesis, reveals further geometry dependencies and again a strong influence of a phase shift between the two helices. For phase shifts of 180°, the results for the continuous rods are mostly recovered for large Bjerrum lengths, but for any other phase shift, the forces are weaker, albeit still attractive. | ||
| + | |||
| + | == Teaching == | ||
| + | * [http://www.icp.uni-stuttgart.de/~icp/Simulation_Methods_in_Physics_I_WS_2015/2016 Simulation Methods in Physics I] (WS 15/16) | ||
Revision as of 16:40, 4 February 2016
PhD student
| Office: | 1.041 |
|---|---|
| Phone: | +49 711 685-67715 |
| Fax: | +49 711 685-63658 |
| Email: | mkuron _at_ icp.uni-stuttgart.de |
| Address: | Michael Kuron Institute for Computational Physics Universität Stuttgart Allmandring 3 70569 Stuttgart Germany |
I am a PhD student in Christian Holm's group, working on lattice-Boltzmann simulations of cooperative behavior of active particles.
Publications
-
Michael Kuron, Axel Arnold.
Role of geometrical shape in like-charge attraction of DNA.
European Physical Journal E 38:20, 2015.
[PDF] (1.1 MB) [DOI]
Master's Thesis
"Efficient Lattice Boltzmann Algorithms for Colloids Undergoing Electrophoresis" (file does not exist!), 2015, Institute for Computational Physics, Stuttgart (Download will be available within the next few months)
For this thesis, waLBerla, a highly-scalable grid framework for applications such as lattice-Boltzmann and solving partial differential equations, was extended so that it can be used for simulations of electrokinetics and active colloids.
Bachelor Thesis
"Like-Charge Attraction in DNA" (file does not exist!), 2013, Institute for Computational Physics, Stuttgart
For this thesis, the MMM1D algorithm was ported to GPGPU. This resulted in a 40-fold performance increase over the previous implementation in ESPResSo and now allows for Molecular Dynamics simulations with electrostatic interactions in 1D-periodic geometries with several thousand particles.
Using this, simulations with various simple DNA models were performed. These simulations show that charge discretization and phase shifts between DNA molecules, modeled as rods, have a significant influence on their attractive properties, an effect that previous works disregarded as it was computationally too expensive, even though it turns out to be too large to neglect for realistic results. Curling up the discretely charged rods into helices, thus making the most accurate model of DNA that could be simulated with the limits of time and resources for this thesis, reveals further geometry dependencies and again a strong influence of a phase shift between the two helices. For phase shifts of 180°, the results for the continuous rods are mostly recovered for large Bjerrum lengths, but for any other phase shift, the forces are weaker, albeit still attractive.
Teaching
- Simulation Methods in Physics I (WS 15/16)