Difference between revisions of "Ewa Anna Oprzeska-Zingrebe"
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'''Publications:''' | '''Publications:''' | ||
| − | Kainz B., Oprzeska – Zingrebe E.A., Toca-Herrera J.L., Biomaterial and cellular properties as examined through atomic force microscopy, fluorescence optical microscopies and spectroscopic techniques, Biotechnology Journal 9 ( | + | Kainz B., Oprzeska – Zingrebe E.A., Toca-Herrera J.L., '''Biomaterial and cellular properties as examined through atomic force microscopy, fluorescence optical microscopies and spectroscopic techniques''', ''Biotechnology Journal'' 9, pp. 51-60, '''2014'''. |
| + | |||
| + | Angulo G., Astumian R. D., et al., '''New methods: general discussion.''', ''Faraday Discussions'' 195, pp. 521-556, '''2016'''. | ||
| + | |||
| + | Oprzeska-Zingrebe E. A., Smiatek J., '''Preferential binding of urea to single-stranded DNA structures: a molecular dynamics study.''', ''Biophys. J.'' 114, pp. 1551-1562, '''2018''', DOI:10.1016/j.bpj.2018.02.013. | ||
| + | |||
| + | Oprzeska-Zingrebe E. A., Smiatek J., '''Aqueous ionic liquids in comparison with standard co-solutes - Differences and common principles in their interaction with protein and DNA structures.''', ''Biophys. Rev.'', DOI: 10.1007/s12551-018-0414-7, '''2018'''. | ||
| + | |||
| + | Oprzeska-Zingrebe, E. A.; Meyer, S.; Roloff, A.; Kunte, H.-J.; Smiatek, J., '''Influence of compatible solute ectoine on distinct DNA structures: thermodynamic insights into molecular binding mechanisms and destabilization effects.''', ''Phys. Chem. Chem. Phys.'', DOI: 10.1039/C8CP03543A, '''2018'''. | ||
| + | |||
| + | Oprzeska-Zingrebe, E. A.; Kohagen, M.; Kästner, J.; Smiatek, J., '''Unfolding of DNA by co-solutes: insights from Kirkwood--Buff integrals and transfer free energies.''', ''Europ. Phys. J. Spec. Top.'' 227, pp. 1665-1679, DOI:10.1140/epjst/e2019-800163-5, '''2019'''. | ||
| + | |||
| + | Oprzeska-Zingrebe, E. A.; Smiatek, J., '''Aqueous Mixtures of Urea and Trimethylamine-N-oxide: Evidence for Kosmotropic or Chaotropic Behavior?''', ''J. Phys. Chem. B'' 123, pp. 4415-4424, DOI: 10.1021/acs.jpcb.9b025982019, '''2019'''. | ||
| + | |||
| + | Oprzeska-Zingrebe, E. A.; Smiatek, J., '''Some Notes on the Thermodynamic Accuracy of Coarse-Grained Models.''', ''Front. Mol. Biosci.'' 6 (87), DOI:10.3389/fmolb.2019.00087, '''2019'''. | ||
| + | |||
| + | Oprzeska-Zingrebe, E. A.; Smiatek, J., '''Interactions of a DNA G-quadruplex with TMAO and Urea: A Molecular Dynamics Study on Co-Solute Compensation Mechanisms.''', ''Phys. Chem. Chem. Phys.'' 23 (2), pp. 1254-1264, DOI:10.1039/D0CP05356B, '''2021'''. | ||
| + | |||
| + | Oprzeska-Zingrebe, E. A.; Smiatek, J., '''Basket-type G-Quadruplex with Two Tetrads in the Presence of TMAO and Urea: A Molecular Dynamics Study''', ''J. Mol. Struct.'' 1274 (2), pp. 134375, DOI:10.1016/j.molstruc.2022.134375, '''2023''' | ||
Latest revision as of 10:13, 1 November 2022
PhD student
| Office: | 1.077 |
|---|---|
| Phone: | +49 711 685-67606 |
| Fax: | +49 711 685-63658 |
| Email: | ewa _at_ icp.uni-stuttgart.de |
| Address: | Ewa Anna Oprzeska-Zingrebe Institute for Computational Physics Universität Stuttgart Allmandring 3 70569 Stuttgart Germany |
Publications:
Kainz B., Oprzeska – Zingrebe E.A., Toca-Herrera J.L., Biomaterial and cellular properties as examined through atomic force microscopy, fluorescence optical microscopies and spectroscopic techniques, Biotechnology Journal 9, pp. 51-60, 2014.
Angulo G., Astumian R. D., et al., New methods: general discussion., Faraday Discussions 195, pp. 521-556, 2016.
Oprzeska-Zingrebe E. A., Smiatek J., Preferential binding of urea to single-stranded DNA structures: a molecular dynamics study., Biophys. J. 114, pp. 1551-1562, 2018, DOI:10.1016/j.bpj.2018.02.013.
Oprzeska-Zingrebe E. A., Smiatek J., Aqueous ionic liquids in comparison with standard co-solutes - Differences and common principles in their interaction with protein and DNA structures., Biophys. Rev., DOI: 10.1007/s12551-018-0414-7, 2018.
Oprzeska-Zingrebe, E. A.; Meyer, S.; Roloff, A.; Kunte, H.-J.; Smiatek, J., Influence of compatible solute ectoine on distinct DNA structures: thermodynamic insights into molecular binding mechanisms and destabilization effects., Phys. Chem. Chem. Phys., DOI: 10.1039/C8CP03543A, 2018.
Oprzeska-Zingrebe, E. A.; Kohagen, M.; Kästner, J.; Smiatek, J., Unfolding of DNA by co-solutes: insights from Kirkwood--Buff integrals and transfer free energies., Europ. Phys. J. Spec. Top. 227, pp. 1665-1679, DOI:10.1140/epjst/e2019-800163-5, 2019.
Oprzeska-Zingrebe, E. A.; Smiatek, J., Aqueous Mixtures of Urea and Trimethylamine-N-oxide: Evidence for Kosmotropic or Chaotropic Behavior?, J. Phys. Chem. B 123, pp. 4415-4424, DOI: 10.1021/acs.jpcb.9b025982019, 2019.
Oprzeska-Zingrebe, E. A.; Smiatek, J., Some Notes on the Thermodynamic Accuracy of Coarse-Grained Models., Front. Mol. Biosci. 6 (87), DOI:10.3389/fmolb.2019.00087, 2019.
Oprzeska-Zingrebe, E. A.; Smiatek, J., Interactions of a DNA G-quadruplex with TMAO and Urea: A Molecular Dynamics Study on Co-Solute Compensation Mechanisms., Phys. Chem. Chem. Phys. 23 (2), pp. 1254-1264, DOI:10.1039/D0CP05356B, 2021.
Oprzeska-Zingrebe, E. A.; Smiatek, J., Basket-type G-Quadruplex with Two Tetrads in the Presence of TMAO and Urea: A Molecular Dynamics Study, J. Mol. Struct. 1274 (2), pp. 134375, DOI:10.1016/j.molstruc.2022.134375, 2023