Difference between revisions of "Simulationsmethoden II"
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− | | water models, | + | | water models, Born model for continuum electrostatics, Coarse graining strategies |
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! 17.6. | ! 17.6. | ||
− | | | + | | Langevin Dynamics, Polymer simulations, Long range interactions |
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! 23.6. | ! 23.6. | ||
− | | | + | | Ewald sum |
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! 24.6. | ! 24.6. | ||
− | | particle mesh and other methods | + | | particle mesh and other methods for long range interactions |
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! 1.7. | ! 1.7. | ||
− | | | + | | Mesoscopic hydrodynamics part I |
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! 7.7. | ! 7.7. | ||
− | | | + | | Mesoscopic hydrodynamics part II |
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! 8.7. | ! 8.7. | ||
− | | | + | | treatment of charged soft matter systems I |
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! 14.7. | ! 14.7. | ||
− | | | + | | treatment of charged soft matter systems II |
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! 15.7. | ! 15.7. | ||
− | | | + | | treatment of charged soft matter systems III |
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Latest revision as of 14:22, 18 June 2009
Overview
Simulationsmethoden in der Physik II:Simulation Methods in Physics II
- Type
- Lecture (2 SWS) and Tutorials (2 SWS)
- The course will take place during the last 6 weeks of the semester with 4 hours per week lectures, and 4 hours tutorial
- Lecturer
- Prof. Dr. Christian Holm (Lecture) and Joan Josep Cerdà, Fatemeh Tabatabaei, Nadezhda Gribova (Tutorials)
- Course language
- Deutsch oder Englisch, wie gewünscht- German or English, by vote
- Time and Room
- Lecture times: Tue 11.30 - 13.00 in V57.04 and Wed 9.45 - 11.15 in V57.02
The lecture is accompanied by hands-on-tutorials which will take place in the CIP-Pool of the ICP, Pfaffenwaldring 27, U 108. They consist of practical exercises at the computer, like small programming tasks, simulations, visualization and data analysis. The tutorials build on each other, therefore continuous attendance is expected. Tutorials are split in two parts 2 hours each on Wednesdays 14.00-15.30 and on Thursdays 17.15-18.45.
Scope
The course will give an introduction to modern simulational techniques, like Monte-Carlo (MC) and Molecular dynamics (MD) simulations (on- and off-lattice), and how to solve non-linear PDEs like the Poisson-Boltzmann equation.
Prerequisites
We expect the participants to have basic knowledge in classical and statistical mechanics, thermodynamics, electrodynamics, and partial differential equations, as well as knowledge of a programming language (preferably C or C++). The attendance of Simulation Methods I or having aquired similar knowledge is assumed.
Certificate Requirements:
- 1. Attendance of the exercise classes
- 2. Obtaining 50% of the possible marks in the hand-in exercises
Lecture
Date | Subject |
---|---|
9.6. | Biomolecular simulations part I |
10.6. | Biomolecular simulations part II
|
16.6. | water models, Born model for continuum electrostatics, Coarse graining strategies |
17.6. | Langevin Dynamics, Polymer simulations, Long range interactions |
23.6. | Ewald sum
|
24.6. | particle mesh and other methods for long range interactions |
30.6. | the repton model |
1.7. | Mesoscopic hydrodynamics part I |
7.7. | Mesoscopic hydrodynamics part II
|
8.7. | treatment of charged soft matter systems I |
14.7. | treatment of charged soft matter systems II |
15.7. | treatment of charged soft matter systems III |
21.7. | |
22.7. | last lecture of Simulationsmethoden II
|
Tutorials (U 108)
Date | Subject |
---|
Recommended literature
-
Daan Frenkel, Berend Smit.
Understanding Molecular Simulation: From Algorithms to Applications.
Part of Computational Science, volume 1. Edition 2.
Academic Press, San Diego, 2002. ISBN: 978-0-12-267351-1.
[DOI] -
Mike P. Allen, Dominik J. Tildesley.
Computer Simulation of Liquids.
Part of Oxford Science Publications. Edition 1.
Clarendon Press, Oxford, 1987.
-
D. C. Rapaport.
The Art of Molecular Dynamics Simulation.
Edition 2.
Cambridge University Press, 2004. ISBN: 9780511816581.
[DOI] -
D. P. Landau, K. Binder.
A guide to Monte Carlo Simulations in Statistical Physics.
Edition second edition.
Cambridge, 2005.
-
M. E. J. Newman, G. T. Barkema.
Monte Carlo Methods in Statistical Physics.
Edition 2002 edition.
Oxford University Press, 1999.
Available E-Books
D.P. Landau and K. Binder.