Difference between revisions of "Jens Smiatek"

From ICPWiki
Jump to navigation Jump to search
Line 273: Line 273:
  
 
== Submitted Manuscripts (all available on request) ==
 
== Submitted Manuscripts (all available on request) ==
 +
:* Smiatek, J.; Jung, A.; Bluhmki, E.
 +
:: '''Validation is not Verification: A Need for Precise Terminology and Scientific Methods in Bioprocess Modelling & Simulation.'''
 +
:: ''submitted'', '''2020'''
 
:* Miranda-Quintana, R. A.; Craig, V. S. J; Smiatek, J.
 
:* Miranda-Quintana, R. A.; Craig, V. S. J; Smiatek, J.
 
:: '''Quantitative Solvation Energies from Gas-Phase Calculations: First Principles Charge Transfer and Perturbation Approaches.'''
 
:: '''Quantitative Solvation Energies from Gas-Phase Calculations: First Principles Charge Transfer and Perturbation Approaches.'''

Revision as of 15:36, 19 December 2020

Smiatek DNA1.jpg
Priv.-Doz. Dr. Jens Smiatek
Group leader
Fax:+49 711 685-63658
Email:smiatek _at_ icp.uni-stuttgart.de
Address:Priv.-Doz. Dr. Jens Smiatek
Institute for Computational Physics
Universität Stuttgart
Allmandring 3
70569 Stuttgart
Germany

Research interests

  • Molecular Theories of Solutions and Extensions of Kirkwood-Buff Theory
  • Specific Ion and Co-Solute Effects
  • Conceptual Density Functional Theory
  • Principles of Chemical Reactions
  • Solvent Effects and Principles of Solvation
  • Polyelectrolytes
  • Ionic Liquids
  • Biomolecules and Specific DNA Structures: I-motif and G-quadruplex
  • Bioprocess Models
  • Diffusive Motion: Connection between Structural and Dynamic Properties
  • Free Energy Landscapes and High-dimensional Design Spaces
  • Hierarchical Bayes Models
  • Electrohydrodynamics

Curriculum Vitae

A detailed CV can be found here.

Newspaper articles and interviews about our work

Journal Covers

A recently published journal cover by us is shown below.

Cover for Batteries, Volume 4 (2018). More information can be found here.

Publications

My profile at "Scholar Google" or follow me on "ResearchGate".

  • Oprzeska-Zingrebe, E. A.; Smiatek, J.
Interactions of a DNA G-quadruplex with TMAO and Urea: A Molecular Dynamics Study on Co-Solute Compensation Mechanisms.
Phys. Chem. Chem. Phys, DOI:10.1039/D0CP05356B, 2020.
DOI:10.1039/D0CP05356B
  • Miranda-Quintana, R. A.; Smiatek, J.
Calculation of Donor Numbers: Computational Estimates for the Lewis Basicity of Solvents.
J. Mol. Liquids, DOI:10.1016/j.molliq.2020.114506, 2020.
DOI:10.1016/j.molliq.2020.114506
  • Yang, J.-Y.; Knape, M. J.; Burkert, O.; Mazzini, V.; Jung, A.; Craig, V. S. J.; Miranda-Quintana, R. M.; Bluhmki, E.; Smiatek, J.
Artificial Neural Networks for the Prediction of Solvation Energies Based on Experimental and Computational Data.
Phys. Chem. Chem. Phys. 22 (24359-24364), 2020.
DOI:10.1039/D0CP03701J
  • Miranda-Quintana, R. A.; Smiatek, J.
Theoretical Insights into Specific Ion Effects and Strong-Weak Acid-Base Rules for Ions in Solution: Deriving the Law of Matching Solvent Affinities from First Principles.
ChemPhysChem 21 (2605-2617), 2020.
DOI:10.1002/cphc.202000644
  • Smiatek, J.; Jung, A.; Bluhmki, E.
Towards a Digital Bioprocess Replica: Computational Approaches in Biopharmaceutical Development and Manufacturing.
Trends Biotechnol. 38 (1141-1153), 2020.
DOI:10.1016/j.tibtech.2020.05.008
  • Solomun, T.; Hahn, M.-B.; Smiatek, J.
Raman Spectroscopic Signature of Ectoine Conformations in Bulk Solution and Crystalline State.
ChemPhysChem 21 (1945-1950), 2020.
DOI:10.1002/cphc.202000457
  • Smiatek, J.
Specific Ion Effects and the Law of Matching Solvent Affinities: A Conceptual Density Functional Theory Approach.
J. Phys. Chem. B 124 (2191-2197), 2020.
DOI:10.1021/acs.jpcb.9b10886
  • Wittmar, J.; Meyer, S.; Sieling, T.; Kunte, H.-J.; Smiatek, J.; Brand, I.
What does Ectoine to DNA? A Molecular Scale Picture of Compatible Solute – Biopolymer Interactions.
J. Phys. Chem. B 124 (7999-8011), 2020.
DOI:10.1021/acs.jpcb.0c05273
  • Smiatek, J.
Theoretical and Computational Insight into Solvent and Specific Ion Effects for Polyelectrolytes: The Crucial Role of Local Molecular Interactions.
Molecules 25 (1661-1683), 2020.
DOI:10.3390/molecules25071661
  • Sanchez, P. A.; Vögele, M.; Smiatek, J.; Qiao, B.; Sega, M.; Holm, C.
PDADMAC/PSS Oligoelectrolyte Multilayers: Internal Structure and Hydration Properties at Early Growth Stages from Atomistic Simulations.
Molecules 25 (1848-1864), 2020.
DOI:10.3390/molecules25081848
  • Zeman, J.; Holm, C.; Smiatek, J.
The Effect of Small Organic Co-Solutes on Water Structure and Dynamics.
J. Chem. Eng. Data 65 (1197-1210), 2020.
DOI:10.1021/acs.jced.9b00577
  • Hützler, W. H.; Mossou, E.; Vollrate, R.; Kohagen, M.; El Ghrissi, I.; Grininger, M.; Zaccai, G.; Smiatek, J.; Oesterhelt, D.
Complex Transitions between Dihydrate and Anhydrate Forms of Ectoine - Unexpected Behavior of A Highly Hygroscopic Compatible Solute in the Solid State.
CrystEngComm 22 (169-172), 2020.
DOI:10.1039/C9CE01599J
  • I. Cekic-Laskovic, N. von Aspern, M. Leissing, C. Wölke, D. Diddens, T. Kobayashi, M. Börner, O. Stubbmann-Kazakova, V. Kozel, G.-V. Röschenthaler, J. Smiatek, S. Nowak, M. Winter.
Non-flammable Fluorinated Phosphorus(III)-Based Co-Solvents for Advanced Lithium Ion Battery Performance.
ChemElectroChem 7 (1499-1508), 2020.
DOI:10.1002/celc.202000386
  • Smiatek, J.
Enthalpic Contributions to Solvent-Solute and Solvent-Ion Interactions: Electronic Perturbation as Key to the Understanding of Molecular Attraction.
J. Chem. Phys. 150 (174112), 2019.
DOI: 10.1063/1.5092567
  • Oprzeska-Zingrebe, E. A.; Smiatek, J.
Some Notes on the Thermodynamic Accuracy of Coarse-Grained Models.
Front. Mol. Biosci. 6 (87), 2019.
DOI:10.3389/fmolb.2019.00087
  • Nandy, A.; Smiatek, J.
Mixtures of LiTFSI and Urea: Ideal Thermodynamic Behavior as Key to the Formation of Deep Eutectic Solvents?
Phys. Chem. Chem. Phys. 21 (12279-12287), 2019.
DOI:10.1039/C9CP01440C
  • Kobayashi, T.; Kemna, A.; Fyta, M.; Braunschweig, B.; Smiatek, J.
Aqueous Mixtures of Room-Temperature Ionic Liquids: Entropy-Driven Accumulation of Water Molecules at Interfaces.
J. Phys. Chem. C 123 (13795-13803), 2019.
DOI: 10.1021/acs.jpcc.9b04098
  • Sanchez, P. A.; Vögele, M.; Qiao, B.; Smiatek, J.; Sega, M.; Holm, C.
Atomistic simulation of PDADMAC/PSS oligoelectrolyte multilayers: overall comparison of tri- and tetra-layer system.
Soft Matter 15, (9437-9451), 2019.
DOI: 10.1039/C9SM02010A
  • Oprzeska-Zingrebe, E. A.; Smiatek, J.
Aqueous Mixtures of Urea and Trimethylamine-N-oxide: Evidence for Kosmotropic or Chaotropic Behavior?
J. Phys. Chem. B 123 (4415-4424), 2019.
DOI: 10.1021/acs.jpcb.9b02598
  • Oldiges, K.; Michalowsky, J.; Grünebaum, M.; von Aspern, N.; Cekic-Laskovic, I.; Smiatek, J.; Winter, M.; Brunklaus, G.
Tetrahydrothiophene 1-Oxide as Highly Effective Co-Solvent for Propylene Carbonate-Based Electrolytes.
J. Power Sources 437 (226881), 2019.
DOI: /10.1016/j.jpowsour.2019.226881
  • Otero-Mato, J. M.; Montes Campos, H.; Lesch, V.; Smiatek, J.; Diddens, D.; Cabeza, O.; Gallego, L. J.; Varela, L. M.
Solvation in Ionic Liquid-Water mixtures: A Computational Study.
J. Mol. Liquids 229 (11273), 2019.
DOI: 10.1016/j.molliq.2019.111273
  • Jia, H.; Billmann, B.; Onishi, H.; Smiatek, J.; Roser, S.; Wiemers-Meyer, S.; Wagner, R.; Winter, M.; Cekic-Laskovic, I.
LiPF6 stabilizer and transition metal cation scavenger: a bi-functional bipyridine-based ligand for lithium ion batteries application.
Chem. Mater. 31 (4025-4033), 2019.
DOI: 10.1021/acs.chemmater.9b00555
  • von Aspern, N.; Diddens, D..; Kobayashi, T.; Börner, M.; Stubbmann-Kazakova, O.; Kozel, V.; Röschenthaler, G.-V.; Smiatek, J.; Winter, M.; Cekic-Laskovic, I.
Fluorinated Cyclic Phosphorus(III)-based Electrolyte Additives for High-Voltage Application in Lithium Ion Batteries: Impact of Structure-Reactivity Relationships on CEI Formation and Cell Performance.
ACS Appl. Mater. Interfaces 11 (16605-16618), 2019.
DOI: 10.1021/acsami.9b0335
  • Kohagen, M.; Uhlig, F.; Smiatek, J.
On the nature of ion-stabilized cytosine pairs in DNA i-motifs: the importance of charge transfer processes.
Int. J. Quant. Chem. 119 (e25933), 2019.
DOI:10.1002/qua.25933
  • Oprzeska-Zingrebe, E. A.; Kohagen, M.; Kästner, J.; Smiatek, J.
Unfolding of DNA by co-solutes: insights from Kirkwood-Buff integrals and transfer free energies.
Europ. Phys. J. Spec. Top. 227 (1665-1679), 2019.
DOI:10.1140/epjst/e2019-800163-5
  • Roy, T.; Szuttor, K.; Smiatek, J.; Holm, C.; Hardt, S.
Conformation and dynamics of long-chain end-tethered polymers in micro channels.
Polymers 11 (488), 2019.
DOI: 10.3390/polym11030488
  • Smiatek, J.; Heuer, A.; Winter, M.
Properties of ion complexes and their impact on charge transport in organic solvent-based electrolyte solutions for lithium batteries: insights from a theoretical perspective.
Batteries 4 (62), 2018.
DOI: 10.3390/batteries4040062
  • Oprzeska-Zingrebe, E. A.; Meyer, S.; Rohloff, A.; Kunte, H.-J.; Smiatek, J.
Influence of compatible solute ectoine on distinct DNA structures: thermodynamic insights into molecular binding mechanisms and destabilization effects.
Phys. Chem. Chem. Phys. 20 (25861-25874), 2018.
DOI: 10.1039/C8CP03543A
  • Krishnamoorthy, A. N.; Oldiges, K.; Winter, M.; Heuer, A.; Cekic-Laskovic, I.; Holm, C.; Smiatek, J.
Electrolyte solvents for high voltage lithium ion batteries: ion correlation and specific anion effects in adiponitrile.
Phys. Chem. Chem. Phys. 20 (25701-25715), 2018.
DOI: 10.1039/C8CP04102D
  • Krishnamoorthy, A. N.; Holm, C.; Smiatek, J.
Specific ion effects for polyelectrolytes in aqueous and non-aqueous media: the importance of the ion solvation behavior.
Soft Matter 14 (6243-6255), 2018.
DOI: 10.1039/C8SM00600H
  • Hartmann, J. J.; Roy, T; Szuttor, K.; Smiatek, J.; Holm, C.; Hardt, S.
Relaxation of surface-tethered polymers under moderate confinement.
Soft Matter 14 (7926-7933), 2018.
DOI: 10.1039/C8SM00600H
  • Michalowsky, J.; Zeman, J.; Holm, C.; Smiatek, J.
A polarizable MARTINI model for monovalent ions in aqueous solution.
J. Chem. Phys. 149 (163319), 2018.
DOI: 10.1063/1.5028354
  • Smiatek, J.; Holm C. (2018)
From the Atomistic to the Macromolecular Scale: Distinct Simulation Approaches for Polyelectrolyte Solutions.
In: Andreoni W., Yip S. (eds.) Handbook of Materials Modeling. Springer Press, 2018.
DOI: https://doi.org/10.1007/978-3-319-42913-7_33-1
  • Krishnamoorthy, A. N.; Holm, C.; Smiatek, J.
The influence of co-solutes on the chemical equilibrium - a Kirkwood-Buff theory for ion pair association-dissociation processes in ternary electrolyte solutions.
J. Phys. Chem. C 122 (10293-10392), 2018.
DOI: 10.1021/acs.jpcc.7b12255
  • Oprzeska-Zingrebe, E. A.; Smiatek, J.
Aqueous ionic liquids in comparison with standard co-solutes - Differences and common principles in their interaction with protein and DNA structures.
Biophys. Rev. 10 (809-824), 2018.
DOI: 10.1007/s12551-018-0414-7 DOI:10.1007/s12551-018-0414-7
  • Oprzeska-Zingrebe, E. A.; Smiatek, J.
Preferential binding of urea to single-stranded DNA structures: a molecular dynamics study.
Biophys. J. 114 (1551-1562), 2018.
DOI:10.1016/j.bpj.2018.02.013
  • Frank Uhlig, Johannes Zeman, Jens Smiatek, Christian Holm.
    First-Principles Parametrization of Polarizable Coarse-Grained Force Fields for Ionic Liquids.
    Journal of Chemical Theory and Computation 14(3):1471–1486, 2018.
    [PDF] (1.2 MB) [DOI]
  • Weyman, A.: Bier, M.; Holm, C.; Smiatek, J.
Microphase separation and the formation of ion conductivity channels in poly(ionic liquid)s: a coarse-grained molecular dynamics study.
J. Chem. Phys. 148 (193824), 2018.
DOI: 10.1063/1.5016814
  • Markthaler, D.; Zeman, J.; Baz, J.; Smiatek, J.; Hansen, N.
Validation of Trimethylamine-N-Oxide (TMAO) Force Fields Based on Thermophysical Properties of Aqueous TMAO Solutions.
J. Phys. Chem. B 121 (10674-10688), 2017.
DOI: 10.1021/acs.jpcb.7b07774
  • Belyanchikov, M. A.; Zhukov, E. S.; Tertia, S.; Zhugayevych, A.; Dressel, M.; Uhlig, F.; Smiatek, J.; Fyta, M.; Thomas, V. G.; Gorshunov, B. P.
Vibrational states of nano-confined water molecules in beryl based on first principles calculations and optical experiments.
Phys. Chem. Chem. Phys. 19 (30740-30748), 2017.
DOI: 10.1039/C7CP06472A
  • Johannes Zeman, Frank Uhlig, Jens Smiatek, Christian Holm.
    A coarse-grained polarizable force field for the ionic liquid 1-butyl-3-methylimidazolium hexafluorophosphate.
    Journal of Physics: Condensed Matter 29(50):504004, 2017.
    [PDF] (1.2 MB) [DOI]
  • Frank Uhlig, Jens Smiatek, Christian Holm.
    Many-body effects in simulations of ionic liquids.
    In Proceedings of the 3rd bwHPC-Symposium, Heidelberg 2016, pages 121–123.
    heiBOOKS, 2017. ISBN: 978-3-946531-70-8.
    [PDF] (1.7 MB) [DOI]
  • Tamal Roy, Kai Szuttor, Jens Smiatek, Christian Holm, Steffen Hardt.
    Electric-field-induced stretching of surface-tethered polyelectrolytes in a microchannel.
    Physical Review E 96(3):032503, 2017.
    [PDF] (794 KB) [DOI]
  • Johannes Niskanen, Christoph J. Sahle, Keith Gilmore, Frank Uhlig, Jens Smiatek, Alexander Föhlisch.
    Disentangling structural information from core-level excitation spectra.
    Physical Review E 96(1):013319, 2017.
    [PDF] (1.7 MB) [DOI] [URL]
  • Tamal Roy, Kai Szuttor, Jens Smiatek, Christian Holm, Steffen Hardt.
    Stretching of surface-tethered polymers in pressure-driven flow under confinement.
    Soft Matter 13(36):6189–6196, 2017.
    [PDF] (2.8 MB) [DOI]
  • Takeshi Kobayashi, Joshua Reid, Seishi Shimizu, Maria Fyta, Jens Smiatek.
    The properties of residual water molecules in ionic liquids: a comparison between direct and inverse Kirkwood-Buff approaches.
    Physical Chemistry Chemical Physics 19(29):18924–18937, 2017.
    [PDF] (4.2 MB) [DOI]
  • Diddo Diddens, Volker Lesch, Andreas Heuer, Jens Smiatek.
    Aqueous Ionic Liquids and Their Influence on Peptide Conformations: Denaturation and Dehydration Mechanisms.
    Physical Chemistry Chemical Physics 19(31):20430–20440, 2017.
    [PDF] (3.2 MB) [DOI]
  • Kai Szuttor, Tamal Roy, Steffen Hardt, Christian Holm, Jens Smiatek.
    The stretching force on a tethered polymer in pressure-driven flow.
    The Journal of Chemical Physics 147(3):034902, 2017.
    [PDF] (1005 KB) [DOI]
  • Jens Smiatek.
    Aqueous ionic liquids and their effects on protein structures: an overview on recent theoretical and experimental results.
    Journal of Physics: Condensed Matter 29(23):233001, 2017.
    [PDF] (1.9 MB) [DOI]
  • Jonas Landsgesell, Christian Holm, Jens Smiatek.
    Simulation of weak polyelectrolytes: A comparison between the constant pH and the reaction ensemble method.
    European Physical Journal Special Topics 226(4):725–736, 2017.
    [PDF] (287 KB) [DOI]
  • Jonas Landsgesell, Christian Holm, Jens Smiatek.
    Wang–Landau Reaction Ensemble Method: Simulation of Weak Polyelectrolytes and General Acid-Base Reactions.
    Journal of Chemical Theory and Computation 13(2):852–862, 2017.
    [PDF] (2.0 MB) [DOI]
  • Julian Michalowsky, Lars V. Schäfer, Christian Holm, Jens Smiatek.
    A refined polarizable water model for the coarse-grained MARTINI force field with long-range electrostatic interactions.
    The Journal of Chemical Physics 146(5):054501, 2017.
    [PDF] (512 KB) [DOI]
  • Jens Smiatek, Niels Hansen, Johannes Kästner.
    Free Energy Calculation Methods and Rare Event Sampling Techniques for Biomolecular Simulations.
    In Simulating Enzyme Reactivity: Computational Methods in Enzyme Catalysis, pages 185–214.
    The Royal Society of Chemistry, 2017. ISBN: 978-1-78262-429-5.
    [DOI] [URL]
  • Martin A. Schroer, Julian Michalowsky, Birgit Fischer, Jens Smiatek, Gerhard Grübel.
    Stabilizing Effect of TMAO on Globular PNIPAM States: Preferential Attraction Induces Preferential Hydration.
    Physical Chemistry Chemical Physics 18(46):31459–31470, 2016.
    [PDF] (2.6 MB) [DOI]
  • Anand Narayanan Krishnamoorthy, Johannes Zeman, Christian Holm, Jens Smiatek.
    Preferential solvation and ion association properties in aqueous dimethyl sulfoxide solutions.
    Physical Chemistry Chemical Physics 18(45):31312–31322, 2016.
    [PDF] (3.6 MB) [DOI]
  • Volker Lesch, Andreas Heuer, Babak R. Rad, Martin Winter, Jens Smiatek.
    Atomistic insights into deep eutectic electrolytes: the influence of urea on the electrolyte salt LiTFSI in view of electrochemical applications.
    Physical Chemistry Chemical Physics 18(41):28403–28408, 2016.
    [PDF] (2.3 MB) [DOI] [URL]
  • Marc Benjamin Hahn, Frank Uhlig, Tihomir Solomun, Jens Smiatek, Heinz Sturm.
    Combined influence of ectoine and salt: spectroscopic and numerical evidence for compensating effects on aqueous solutions.
    Physical Chemistry Chemical Physics 18(41):28398–28402, 2016.
    [PDF] (2.2 MB) [DOI]
  • Konrad Breitsprecher, Anand Narayanan Krishnamoorthy, Jens Smiatek, Christian Holm.
    Force Field Optimization for Ionic Liquids: FFOIL.
    In High Performance Computing in Science and Engineering '15, pages 101–117.
    Springer, 2016.
    [PDF] (1.2 MB) [DOI]
  • Pedro A. Sánchez, Jens Smiatek, Qiao Baofu, Marcello Sega, Christian Holm.
    Atomistic Simulation of Oligoelectrolyte Multilayers Growth.
    In High Performance Computing in Science and Engineering '15: Transactions of the High Performance Computing Center, Stuttgart (HLRS) 2015, pages 215–228. Edited by E. Wolfgang Nagel, H. Dietmar Kröner, M. Michael Resch.
    Springer International Publishing, 2016. ISBN: 978-3-319-24633-8.
    [PDF] (292 KB) [DOI]
  • Samantha Micciulla, Julian Michalowsky, Martin A. Schroer, Christian Holm, Regine von Klitzing, Jens Smiatek.
    Concentration dependent effects of urea binding to poly(N-isopropylacrylamide) brushes: a combined experimental and numerical study.
    Physical Chemistry Chemical Physics 18(7):5324–5335, 2016.
    [PDF] (2.4 MB) [DOI]
  • Volker Lesch, Andreas Heuer, Christian Holm, Jens Smiatek.
    Properties of Apolar Solutes in Alkyl Imidazolium-Based Ionic Liquids: The Importance of Local Interactions.
    ChemPhysChem 17(3):387–394, 2016.
    [PDF] (1.2 MB) [DOI]
  • Martin Vögele, Christian Holm, Jens Smiatek.
    Coarse-grained simulations of polyelectrolyte complexes: MARTINI models for poly(styrene sulfonate) and poly(diallyldimethylammonium).
    The Journal of Chemical Physics 143(24):243151, 2015.
    [PDF] (910 KB) [DOI]
  • Marc Benjamin Hahn, Tihomir Solomun, Robert Wellhausen, Sabrina Hermann, Harald Seitz, Susann Meyer, Hans-Jörg Kunte, Johannes Zeman, Frank Uhlig, Jens Smiatek, Heinz Sturm.
    Influence of the Compatible Solute Ectoine on the Local Water Structure: Implications for the Binding of the Protein G5P to DNA.
    The Journal of Physical Chemistry B 119(49):15212–15220, 2015.
    [PDF] (479 KB) [DOI]
  • Florian Fahrenberger, Owen A. Hickey, Jens Smiatek, Christian Holm.
    The influence of charged-induced variations in the local permittivity on the static and dynamic properties of polyelectrolyte solutions.
    The Journal of Chemical Physics 143(24):243140, 2015.
    [PDF] (1.9 MB) [DOI]
  • Volker Lesch, Andreas Heuer, Vasileios A. Tatsis, Christian Holm, Jens Smiatek.
    Peptides in the presence of aqueous ionic liquids: tunable co-solutes as denaturants or protectants?
    Physical Chemistry Chemical Physics 17(39):26049–26053, 2015.
    [PDF] (1.8 MB) [DOI]
  • Florian Fahrenberger, Owen A. Hickey, Jens Smiatek, Christian Holm.
    Importance of varying permittivity on the conductivity of polyelectrolyte solutions.
    Physical Review Letters 115(11):118301, 2015.
    [PDF] (523 KB) [DOI]
  • Martin Vögele, Christian Holm, Jens Smiatek.
    Properties of the polarizable MARTINI water model: A comparative study for aqueous electrolyte solutions.
    Journal of Molecular Liquids 212:103–110, 2015.
    [PDF] (792 KB) [DOI]
  • Volker Lesch, Andreas Heuer, Christian Holm, Jens Smiatek.
    Solvent effects of 1-ethyl-3-methylimidazolium acetate: solvation and dynamic behavior of polar and apolar solutes.
    Physical Chemistry Chemical Physics 17(13):8480–8490, 2015.
    [PDF] (2.7 MB) [DOI]
  • Andreas Wohlfarth, Jens Smiatek, Klaus-Dieter Kreuer, Shogo Takamuku, Patric Jannasch, Joachim Maier.
    Proton Dissociation of Sulfonated Polysulfones: Influence of Molecular Structure and Conformation.
    Macromolecules 48(4):1134–1143, 2015.
    [PDF] (1.5 MB) [DOI]
  • Jiajia Zhou, Jens Smiatek, Evgeny S Asmolov, Olga I Vinogradova, Friederike Schmid.
    Application of Tunable-Slip Boundary Conditions in Particle-Based Simulations.
    In High Performance Computing in Science and Engineering '14.
    Springer, 2014.
  • Andreas Heuer, Jens Smiatek, Bernd Strauss, Dennis Riedl.
    Informationsgehalt von Fussball-Spieldaten.
    In Fussball in Forschung und Lehre - Beiträge und Analysen zum Fusballsport XIX. Part of Schriften der Deutschen Vereinigung für Sportwissenschaft Band 240.
    Czwalina, 2014.
  • Anand Narayanan Krishnamoorthy, Christian Holm, Jens Smiatek.
    Local Water Dynamics around Antifreeze Protein Residues in the Presence of Osmolytes: The Importance of Hydroxyl and Disaccharide Groups.
    The Journal of Physical Chemistry B 118(40):11613–11621, 2014.
    [PDF] (1.0 MB) [DOI]
  • Samantha Micciulla, Pedro A. Sánchez, Jens Smiatek, Baofu Qiao, Marcello Sega, André Laschewsky, Christian Holm, Regine von Klitzing.
    Layer-by-Layer Formation of Oligoelectrolyte Multilayers: A Combined Experimental and Computational Study.
    Soft Materials 12(sup1):S14–S21, 2014.
    [PDF] (581 KB) [DOI]
  • Owen A. Hickey, Christian Holm, Jens Smiatek.
    Lattice-Boltzmann simulations of the electrophoretic stretching of polyelectrolytes: The importance of hydrodynamic interactions.
    The Journal of Chemical Physics 140(16):164904, 2014.
    [PDF] (739 KB) [DOI]
  • Jens Smiatek, Andreas Heuer.
    Deprotonation mechanism of a single-stranded DNA i-motif.
    RSC Advances 4(33):17110–17113, 2014.
    [PDF] (380 KB) [DOI]
  • Matthias U. Bohner, Johannes Zeman, Jens Smiatek, Axel Arnold, Johannes Kästner.
    Nudged-elastic band used to find reaction coordinates based on the free energy.
    The Journal of Chemical Physics 140(7):074109, 2014.
    [PDF] (637 KB) [DOI]
  • Jens Smiatek, Andreas Wohlfarth, Christian Holm.
    The solvation and ion condensation properties for sulfonated polyelectrolytes in different solvents—a computational study.
    New Journal of Physics 16(2):025001, 2014.
    [PDF] (742 KB) [DOI]
  • Jens Smiatek.
    Osmolyte Effects: Impact on the Aqueous Solution around Charged and Neutral Spheres.
    The Journal of Physical Chemistry B 118(3):771–782, 2014.
    [PDF] (1.7 MB) [DOI]
  • Jens Smiatek, Daniel Janssen-Müller, Rudolf Friedrich, Andreas Heuer.
    Systematic detection of hidden complexities in the unfolding mechanism of a cytosine-rich DNA strand.
    Physica A: Statistical Mechanics and its Applications 394(0):136–144, 2014.
    [PDF] (930 KB) [DOI] [URL]
  • J. Smiatek, R. K. Harishchandra, H.-J. Galla, A. Heuer.
    Low Concentrated Hydroxiectoine Solutions in Presence of DPPC Lipid Bilayers: A Computer Simulation Study.
    Biophysical Chemistry 180:102–109, 2013.
    [PDF] (895 KB) [DOI]
  • Jens Smiatek, Andreas Heuer, Hendrik Wagner, Armido Studer, Carsten Hentschel, Lifeng Chi.
    Coat thickness dependent adsorption of hydrophobic molecules at polymer brushes.
    The Journal of Chemical Physics 138(4), 2013.
    [PDF] (759 KB) [DOI]
  • Carsten Hentschel, Hendrik Wagner, Jens Smiatek, Andreas Heuer, Harald Fuchs, Xi Zhang, Armido Studer, Lifeng Chi.
    AFM-based Force Spectroscopy on Polystyrene Brushes: Effect of Brush Thickness on Protein Adsorption.
    Langmuir 29:1850–1856, 2013.
  • Jens Smiatek, Dongsheng Liu, Andreas Heuer.
    Unfolding pathways and the free energy landscape of a single-stranded DNA i-motif.
    In From Computational Biophysics to Systems Biology (CBSB11). Part of IAS-Series.
    NIC-Publishing, 2012.
  • Sebastian Meinhardt, Jens Smiatek, Ralf Eichhorn, Friederike Schmid.
    Separation of Chiral Particles in Micro- or Nanofluidic Channels.
    Physical Review Letters 108(21):214504, 2012.
    [PDF] (493 KB) [DOI]
  • Jens Smiatek, Rakesh Kumar Harishchandra, Oliver Rubner, Hans-Joachim Galla, Andreas Heuer.
    Properties of compatible solutes in aqueous solution.
    Biophysical Chemistry 160(1):62–68, 2012.
    [PDF] (856 KB) [DOI]
  • Jens Smiatek, Friederike Schmid.
    Mesoscopic Simulation Methods for Studying Flow and Transport in Electric Fields in Micro- and Nanochannels.
    In Advances in Microfluidics, chapter 5. Edited by Ryan T. Kelly.
    InTech, 2012.
    [PDF] (427 KB) [DOI] [URL]
  • Jens Smiatek, Dongsheng Liu, Andreas Heuer.
    High temperature unfolding simulations of a single-stranded DNA i-motif.
    Current Physical Chemistry 2:115–123, 2012.
  • Jens Smiatek, Chun Chen, Dongsheng Liu, Andreas Heuer.
    Stable Conformations of a Single Stranded Deprotonated DNA i-Motif.
    Journal of Physical Chemistry B 115(46):13788–13795, 2011.
    [PDF] (4.7 MB) [DOI]
  • Jens Smiatek, Friederike Schmid.
    Mesoscopic Simulations of Polyelectrolyte Electrophoresis in Nanochannels.
    In High Performance Computing in Science and Engineering '10, pages 53–67. Edited by Wolfgang E. Nagel, Dietmar B. Kröner, Michael M. Resch.
    Springer Berlin Heidelberg, 2011. ISBN: 978-3-642-15747-9.
    [DOI]
  • Jens Smiatek, Andreas Heuer.
    Calculation of free energy landscapes: A histogram reweighted metadynamics approach.
    Journal of Computational Chemistry 32(10):2084–2096, 2011.
    [PDF] (595 KB) [DOI]
  • Jens Smiatek, Friederike Schmid.
    Mesoscopic simulations of electroosmotic flow and electrophoresis in nanochannels.
    Computer Physics Communications 182(9):1941–1944, 2011.
    [PDF] (277 KB) [DOI] [URL]
  • Jens Smiatek, Friederike Schmid.
    Polyelectrolyte Electrophoresis in Nanochannels: A Dissipative Particle Dynamics Simulation.
    Journal of Physical Chemistry B 114(19):6266–6272, 2010.
    [PDF] (250 KB) [DOI]
  • Jens Smiatek.
    Mesoscopic simulations of electrohydrodynamic phenomena.
    PhD thesis, Bielefeld University, Germany, jan, 2009.
    [PDF] (1.9 MB)
  • Jens Smiatek, Marcello Sega, Christian Holm, Ulf D. Schiller, Friederike Schmid.
    Mesoscopic simulations of the counterion-induced electro-osmotic flow: A comparative study.
    The Journal of Chemical Physics 130(244702), 2009.
    [PDF] (370 KB) [DOI]
  • Jens Smiatek, Michael P. Allen, Friederike Schmid.
    Tunable-slip boundaries for coarse-grained simulations of fluid flow.
    European Physical Journal E 26:115–122, 2008.
    [PDF] (179 KB)


Submitted Manuscripts (all available on request)

  • Smiatek, J.; Jung, A.; Bluhmki, E.
Validation is not Verification: A Need for Precise Terminology and Scientific Methods in Bioprocess Modelling & Simulation.
submitted, 2020
  • Miranda-Quintana, R. A.; Craig, V. S. J; Smiatek, J.
Quantitative Solvation Energies from Gas-Phase Calculations: First Principles Charge Transfer and Perturbation Approaches.
submitted, 2020
  • Kobayashi, T.; Smiatek, J; Fyta, M.
A Microstructural Insight into Ionic Liquids Solutions Based on Energetic Arguments.
submitted, 2020.
Retrieved from "https://www2.icp.uni-stuttgart.de/~icp/mediawiki/index.php?title=Jens_Smiatek&oldid=25222"