Jens Smiatek

From ICPWiki
Jump to navigation Jump to search
The printable version is no longer supported and may have rendering errors. Please update your browser bookmarks and please use the default browser print function instead.
Jens neu.jpg
Dr. Jens Smiatek
Postdoc
Office:1.032
Phone:+49 711 685-63757
Fax:+49 711 685-63658
Email:smiatek _at_ icp.uni-stuttgart.de
Address:Dr. Jens Smiatek
Institute for Computational Physics
Universität Stuttgart
Allmandring 3
70569 Stuttgart
Germany

Research interests

  • Specific DNA structures: i-motif and g-quadruplex
  • Protein folding
  • Influence of solvent properties on structure formation (solvent-solute interactions)
  • Influence of osmolytes on water structure
  • Electrohydrodynamics
  • Polyelectrolytes and interactions with ions
  • Microscale flows
  • Method development

Publications

[19] Smiatek, J.; Harishchandra, R. K.; Galla, H.-J. and Heuer, A.: Compatible solutes and their effects on DPPC lipid bilayers: a computer simulation study, submitted to Biophysical Chemistry (2012)

[18] Smiatek, J. and Heuer, A.: A statistical view on team handball results: home advantage, team fitness and prediction of match outcomes, submitted to J. Quant. Anal. Sports (2012)

[17] Smiatek, J.; Wagner, H.; Hentschel C.; Chi, L.; Studer, A. and Heuer, A.: Coat thickness dependent adsorption of hydrophobic molecules at polymer brushes, submitted to J. Chem. Phys. (2012)

[16] Hentschel, C.; Wagner, H.; Smiatek, J.; Heuer, A.; Fuchs, H.; Zhang, X.; Studer, A. and Chi, L.: AFM-based force spectroscopy on polystyrene brushes: Effect of brush thickness on protein adsorption, submitted to Langmuir (2012)

[15] Smiatek, J.; Janssen-Mueller, D.; Friedrich, R. and Heuer, A.: Hidden complexities in the unfolding mechanism of a cytosine-rich DNA strand, submitted to Physica A (2012)

[14] Smiatek, J.; Galla, H.-J. and Heuer, A.: Molecular Dynamics simulations of macromolecules in presence of compatible solutes, submitted to J. Phys. Chem. B. (2012)

[13] Smiatek, J.; Liu, D. and Heuer, A.: Unfolding pathways and the free energy landscape of a single-stranded DNA i-motif, From Computational Biophysics to Systems Biology (CBSB11) – Celebrating Harold Scheraga’s 90th Birthday (Proceedings), Schriften des Forschungszentrums Jülich, IAS Series 8, 201 (2012)

[12] Meinhardt, S.; Smiatek, J.; Eichhorn, R. and Schmid, F.: Separation of chiral particles in micro- or nanofluidic channels, Phys. Rev. Lett. 108, 214504 (2012)

[11] Smiatek, J.; Harishchandra, R. K.; Rubner, O.; Galla, H.-J. and Heuer A.: Properties of compatible solutes in aqueous solution, Biophysical Chemistry 160, 62 (2012)

[10] Smiatek, J. and Schmid, F.: Mesoscopic simulation methods for studying flow and transport in electric fields in micro- and nanochannels, invited chapter for Advances in Microfluidics, edited by Ryan T. Kelly, InTech, DOI: 10.5772/2225 (2012)

[9] Smiatek, J.; Liu, D. and Heuer, A.: High temperature unfolding simulations of a single-stranded DNA i-motif, Curr. Phys. Chem. 2, 115 (2012)

[8] Smiatek, J.; Chen, C.; Liu, D. and Heuer, A.: Stable conformations of a single-stranded deprotonated DNA i-motif, J. Phys. Chem. B 115, 13788 (2011)

[7] Smiatek, J. and Schmid, F.: Mesoscopic simulations of electroosmotic flow and electrophoresis in nanochannels, Comp. Phys. Comm. 182, 1941 (2011)

[6] Smiatek, J. and Heuer, A.: Calculation of free energy landscapes: a histogram reweighted metadynamics approach, J. Comp. Chem. 32, 2084 (2011)

[5] Smiatek, J. and Schmid F.: Mesoscopic simulations of polyelectrolyte electrophoresis in nanochannels, p. 53 in High Performance Computing in Science and Engineering '10: Transactions of the High Performance Computing Center, edited by Nagel, W. E.; Kröner, D. B.; Resch, M. M.; Springer, Berlin Heidelberg (2011)

[4] Smiatek, J. and Schmid, F.: Polyelectrolyte electrophoresis in nanochannels: a Dissipative Particle Dynamics simulation, J. Phys. Chem. B 114, 6266 (2010)

[3] Smiatek, J.; Sega, M.; Schiller, U. D.; Holm, C. and Schmid, F.: Mesoscopic simulations of the counterion-induced electro-osmotic flow: A comparative study, J. Chem. Phys. 130, 244702 (2009)

[2] Smiatek J.: Mesoscopic simulations of electrohydrodynamic phenomena, PhD thesis, available at http://bieson.ub.uni-bielefeld.de/volltexte/2009/1475/pdf/Diss.pdf, Bielefeld University, Germany (2009)

[1] Smiatek, J.; Allen, M. P. and Schmid, F.: Tunable-slip boundaries for coarse-grained simulations of fluid flow, Europ. Phys. J. E 26, 115 (2008)