Difference between revisions of "Simulation Techniques for Soft Matter Sciences (SS 2007)/Introduction"

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= Introduction =
 
 
 
== Overview ==
 
== Overview ==
 
This tutorial covers
 
This tutorial covers
  
* Introduction to Linux
+
* Introduction
* How to shoot Pi
 
* Simple sampling / Importance sampling
 
 
* GNU Scientific Library (GSL)
 
* GNU Scientific Library (GSL)
 
+
* Calculating Pi
== Contents ==
+
* Numerical Integration
 
 
=== Introduction to Linux ===
 
 
 
In this part of the tutorial you have to do something ...
 
 
 
=== How to shoot Pi ===
 
 
 
Now, do something else ..
 
 
 
=== Simple sampling / Importance sampling ===
 
 
 
=== GNU Scientific Library (GSL) ===
 
http://www.gnu.org/software/gsl/
 
http://www.gnu.org/software/gsl/manual/html_node/Random-Number-Generation.html
 
 
 
Generator: gsl_rng_rand
 
 
 
    This is the BSD rand generator. Its sequence is
 
 
 
              x_{n+1} = (a x_n + c) mod m
 
 
 
    with a = 1103515245, c = 12345 and m = 2^31. The seed specifies the initial value, x_1. The period of this generator is 2^31, and it uses 1 word of storage per generator.
 
 
 
Generator: gsl_rng_mt19937
 
 
 
    The MT19937 generator of Makoto Matsumoto and Takuji Nishimura is a variant of the twisted generalized feedback shift-register algorithm, and is known as the “Mersenne Twister” generator. It has a Mersenne prime period of 2^19937 - 1 (about 10^6000) and is equi-distributed in 623 dimensions. It has passed the diehard statistical tests. It uses 624 words of state per generator and is comparable in speed to the other generators. The original generator used a default seed of 4357 and choosing s equal to zero in gsl_rng_set reproduces this. Later versions switched to 5489 as the default seed, you can choose this explicitly via gsl_rng_set instead if you require it.
 
 
 
    For more information see,
 
 
 
        * Makoto Matsumoto and Takuji Nishimura, “Mersenne Twister: A 623-dimensionally equidistributed uniform pseudorandom number generator”. ACM Transactions on Modeling and Computer Simulation, Vol. 8, No. 1 (Jan. 1998), Pages 3–30
 
 
 
    The generator gsl_rng_mt19937 uses the second revision of the seeding procedure published by the two authors above in 2002. The original seeding procedures could cause spurious artifacts for some seed values. They are still available through the alternative generators gsl_rng_mt19937_1999 and gsl_rng_mt19937_1998.
 
 
 
 
 
Uniform vs. non-uniform distribution
 
  
 
== Resources ==
 
== Resources ==
 +
* {{Download|T1w.pdf|Worksheet for the first tutorial}}
 +
* {{Download|T1c.tgz|Source code for the first tutorial|tar}}
  
Here you can download everything and don't have to work anymore ....
+
== Links ==
 
+
* [http://www.gnu.org/software/gsl/manual/html_node/ GNU Scientific Library]
== Contents ==
+
* [http://ib.berkeley.edu/labs/slatkin/eriq/classes/guest_lect/mc_lecture_notes.pdf Monte Carlo sampling]

Latest revision as of 10:39, 26 April 2007

Overview

This tutorial covers

  • Introduction
  • GNU Scientific Library (GSL)
  • Calculating Pi
  • Numerical Integration

Resources

Links