Difference between revisions of "Hauptseminar Modern Simulation Methods for Structure and Properties of Charged Complex Molecules"
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| + | {{Infobox| The Hauptseminar on 05.07.2016 has been shifted to 08.07.2016 at 10am. Note the new time: 13:00 on Tuesdays}} | ||
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== Overview == | == Overview == | ||
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:Seminar (Talks and Discussion) | :Seminar (Talks and Discussion) | ||
;Date and Time | ;Date and Time | ||
| − | :weekly during the SS 2016; Tuesdays at | + | :weekly during the SS 2016; Tuesdays at 13:00 in the ICP meeting room. <!--Wednesday 15.45h; the dates are specified per topic--> |
;Location | ;Location | ||
:Institut für Computerphysik, room 01.079 | :Institut für Computerphysik, room 01.079 | ||
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|- | |- | ||
| 12.04.2016 | | 12.04.2016 | ||
| − | | | + | | 13:00 |
| [[Hauptseminar_Multiscale_Simulations_SS_2016/DFT_simulating_DNA| Density functional theory: simulating DNA| tba]] | | [[Hauptseminar_Multiscale_Simulations_SS_2016/DFT_simulating_DNA| Density functional theory: simulating DNA| tba]] | ||
| [[Evangelos Ribeiro Tzaras]] || [[Frank Maier]] | | [[Evangelos Ribeiro Tzaras]] || [[Frank Maier]] | ||
| Line 52: | Line 54: | ||
|- | |- | ||
| − | | | + | | 19.04.2016 |
| 14:00 | | 14:00 | ||
| [[Hauptseminar_Multiscale_Simulations_SS_2016/Ab initio molecular dynamics: Proton transport in water | Ab initio molecular dynamics: Proton transport in water | tba]] | | [[Hauptseminar_Multiscale_Simulations_SS_2016/Ab initio molecular dynamics: Proton transport in water | Ab initio molecular dynamics: Proton transport in water | tba]] | ||
| Felix Gross || [[Frank Uhlig]] | | Felix Gross || [[Frank Uhlig]] | ||
| − | | | + | | {{Download|HauptseminarFGross_2016_talk.pdf|Talk}} |
| − | | | + | | {{Download|HauptseminarFGross_2016.pdf|Handout}} |
|- | |- | ||
| − | | | + | | 10.05.2016 |
| 14:00 | | 14:00 | ||
| [[Hauptseminar_Multiscale_Simulations_SS_2016/Quantum_transport_sensing_DNA| Quantum transport simulations: sensing DNA | tba]] | | [[Hauptseminar_Multiscale_Simulations_SS_2016/Quantum_transport_sensing_DNA| Quantum transport simulations: sensing DNA | tba]] | ||
| − | | Frank | + | | Frank Schulz || [[Ganesh Sivaraman]] |
| Talk<!--{{DownloadExt|/teaching/2015-ss-hauptseminar/Richard_presentation_HSAM.pptx|Talk}} --> | | Talk<!--{{DownloadExt|/teaching/2015-ss-hauptseminar/Richard_presentation_HSAM.pptx|Talk}} --> | ||
| − | | | + | | {{Download|Frank_Handout_Hauptseminar_final.pdf|Handout}} |
| Line 72: | Line 74: | ||
|- | |- | ||
| − | | | + | | 31.05.2016 |
| 14:00 | | 14:00 | ||
| [[Hauptseminar_Multiscale_Simulations_SS_2016/Classical atomistic force fields for single- and double-stranded DNA | Classical atomistic force fields for single- and double-stranded DNA | tba]] | | [[Hauptseminar_Multiscale_Simulations_SS_2016/Classical atomistic force fields for single- and double-stranded DNA | Classical atomistic force fields for single- and double-stranded DNA | tba]] | ||
| Sven Erik Ilse || [[Ewa Anna Oprzeska-Zingrebe]] | | Sven Erik Ilse || [[Ewa Anna Oprzeska-Zingrebe]] | ||
| Talk<!--{{DownloadExt|/teaching/2015-ss-hauptseminar/Richard_presentation_HSAM.pptx|Talk}} --> | | Talk<!--{{DownloadExt|/teaching/2015-ss-hauptseminar/Richard_presentation_HSAM.pptx|Talk}} --> | ||
| − | | | + | | {{Download|handout_ilse_HS_SS16.pdf|Handout}} |
|- | |- | ||
| − | | | + | | 07.06.2016 |
| 14:00 | | 14:00 | ||
| [[Hauptseminar_Multiscale_Simulations_SS_2016/Ion transport through nanopores via atomistic simulations| Ion transport through nanopores via atomistic simulations| tba]] | | [[Hauptseminar_Multiscale_Simulations_SS_2016/Ion transport through nanopores via atomistic simulations| Ion transport through nanopores via atomistic simulations| tba]] | ||
| Carl Bühner || [[Florian Weik]] | | Carl Bühner || [[Florian Weik]] | ||
| Talk<!--{{DownloadExt|/teaching/2015-ss-hauptseminar/Richard_presentation_HSAM.pptx|Talk}} --> | | Talk<!--{{DownloadExt|/teaching/2015-ss-hauptseminar/Richard_presentation_HSAM.pptx|Talk}} --> | ||
| − | | | + | | {{Download|handout_buehner_HS_SS16.pdf|Handout}} |
|- | |- | ||
| − | | | + | | 08.07.2016 |
| − | | | + | | 10:00 |
| [[Hauptseminar_Multiscale_Simulations_SS_2016/coupling_MD_DFT_DNA_translocation_pores| Coupling MD and DFT: DNA translocation through pores | tba]] | | [[Hauptseminar_Multiscale_Simulations_SS_2016/coupling_MD_DFT_DNA_translocation_pores| Coupling MD and DFT: DNA translocation through pores | tba]] | ||
| Felix Huber || [[Maria Fyta]] | | Felix Huber || [[Maria Fyta]] | ||
| Line 101: | Line 103: | ||
|- | |- | ||
| − | | | + | | 21.06.2016 |
| 14:00 | | 14:00 | ||
| [[Hauptseminar_Multiscale_Simulations_SS_2016/A coarse grained model for electrokinetic applications of DNA transport through nanopores|A coarse grained model for electrokinetic applications of DNA transport through nanopores| tba]] | | [[Hauptseminar_Multiscale_Simulations_SS_2016/A coarse grained model for electrokinetic applications of DNA transport through nanopores|A coarse grained model for electrokinetic applications of DNA transport through nanopores| tba]] | ||
| Daan Boltje || [[Gary Davies]] | | Daan Boltje || [[Gary Davies]] | ||
| Talk<!--{{DownloadExt|/teaching/2015-ss-hauptseminar/Richard_presentation_HSAM.pptx|Talk}} --> | | Talk<!--{{DownloadExt|/teaching/2015-ss-hauptseminar/Richard_presentation_HSAM.pptx|Talk}} --> | ||
| − | | Handout<!--{{DownloadExt|/teaching/2015-ss-hauptseminar/Richard_handout_HSAM.pdf|Handout}}--> | + | | {{Download|handout_boltje_HS_SS16.pdf|Handout}} |
| + | <!--| Handout<!--{{DownloadExt|/teaching/2015-ss-hauptseminar/Richard_handout_HSAM.pdf|Handout}}--> | ||
|- | |- | ||
| − | | | + | | 28.06.2016 |
| 14:00 | | 14:00 | ||
| [[Hauptseminar_Multiscale_Simulations_SS_2016/Reactive force fields: simulating chemical reactions| Reactive force fields: simulating chemical reactions| tba]] | | [[Hauptseminar_Multiscale_Simulations_SS_2016/Reactive force fields: simulating chemical reactions| Reactive force fields: simulating chemical reactions| tba]] | ||
| Ingo Tischler || [[Narayanan Krishnamoorthy Anand]] | | Ingo Tischler || [[Narayanan Krishnamoorthy Anand]] | ||
| Talk<!--{{DownloadExt|/teaching/2015-ss-hauptseminar/Richard_presentation_HSAM.pptx|Talk}} --> | | Talk<!--{{DownloadExt|/teaching/2015-ss-hauptseminar/Richard_presentation_HSAM.pptx|Talk}} --> | ||
| − | | | + | | {{Download|handout_tischler_HS_SS16.pdf|Handout}} |
| Line 128: | Line 131: | ||
|- | |- | ||
| − | | | + | | 08.07.2016 |
| − | | | + | | 10:00 |
| [[Hauptseminar_Multiscale_Simulations_SS_2016/An electrokinetic LB based model for ion transport and macromolecular electrophoresis|An electrokinetic LB based model for ion transport and macromolecular electrophoresis| tba]] | | [[Hauptseminar_Multiscale_Simulations_SS_2016/An electrokinetic LB based model for ion transport and macromolecular electrophoresis|An electrokinetic LB based model for ion transport and macromolecular electrophoresis| tba]] | ||
| Raffael Pecoroni || [[Michael Kuron]] | | Raffael Pecoroni || [[Michael Kuron]] | ||
| Talk<!--{{DownloadExt|/teaching/2015-ss-hauptseminar/Richard_presentation_HSAM.pptx|Talk}} --> | | Talk<!--{{DownloadExt|/teaching/2015-ss-hauptseminar/Richard_presentation_HSAM.pptx|Talk}} --> | ||
| − | | | + | | {{Download|Handout_pecoroni_hs2016ss.pdf|Handout}} |
|- | |- | ||
| − | | | + | | 12.07.2016 |
| − | | | + | | 13:00 |
| [[Hauptseminar_Multiscale_Simulations_SS_2016/Mean-field modelling of EOF and electrophoresis with an FEM based approach|Mean-field modelling of EOF and electrophoresis with an FEM based approach| tba]] | | [[Hauptseminar_Multiscale_Simulations_SS_2016/Mean-field modelling of EOF and electrophoresis with an FEM based approach|Mean-field modelling of EOF and electrophoresis with an FEM based approach| tba]] | ||
| − | | | + | | Tobias Biesner || [[Georg Rempfer]] |
| Talk<!--{{DownloadExt|/teaching/2015-ss-hauptseminar/Richard_presentation_HSAM.pptx|Talk}} --> | | Talk<!--{{DownloadExt|/teaching/2015-ss-hauptseminar/Richard_presentation_HSAM.pptx|Talk}} --> | ||
| − | | | + | | {{Download|Handout_biesner_hs2016ss.pdf|Handout}} |
Latest revision as of 13:06, 12 July 2016
 |
The Hauptseminar on 05.07.2016 has been shifted to 08.07.2016 at 10am. Note the new time: 13:00 on Tuesdays |
Overview
- Type
- Seminar (Talks and Discussion)
- Date and Time
- weekly during the SS 2016; Tuesdays at 13:00 in the ICP meeting room.
- Location
- Institut für Computerphysik, room 01.079
- Credit Points
- 6 CP (ECTS) (German MSc Physics Program)
- 3 CP (ECTS) (Intern. MSc Physics Program)
- Teachers
- Prof. Dr. Christian Holm (ICP)
- Dr. Jens Smiatek (ICP)
- JP. Dr. Maria Fyta (ICP)
- Course Number
- tba
- Modules
- tba
- Language
- English
- Requirements
- We expect the participants to have fundamental knowledge in classical and statistical mechanics, thermodynamics, electrodynamics, and partial differential equations.
- Registration for the Seminar
- Please write an email to Maria Fyta until February 1st at 24:00. A date for a first meeting will be announced soon to gauge the interest of the students, discuss the topics, and handle the topic assignment.
- There will be organizational meeting that will be mandatory to all participants on February 4, 2016 at 13:00 to discuss topics and style and other requirements.
Schedule, speakers and resources
Getting the credit points
To get the credit points for the seminar, the following criteria should be met:
- All participants must:
- Make the first appointment with their supervisor 2 months (a minimum of 8 weeks) before giving their talk
- Have read the literature provided on the website/by the supervisor before this first meeting
- Hand in a draft of their presentation 1 month (a minimum of 4 weeks) before giving their talk
- Give a trial talk 2 weeks in advance of their public talk and hand in their final draft of the handout
- Hand in the final version of their handout 1 week in advance
- Give their talk at the arranged time
- Be present at all talks
- Take part in the discussions following the talks
- The handout:
- Consists of 8 to 10 A4 pages (incl. pictures; 10 pt font, single space text)
- Describes the contents of the talk, written out in full
- Is written for the other participants
- Is written in English
- The talk:
- Consists of material pertaining to the topic
- Has a length of 45 minutes
- Is prepared in electronic form
- Is held in English
- Participants are graded according to:
- The quality of the trial talk and final draft of the hand out (as well as self-dependent preparation of both) (50%)
- The quality of the final presentation (25%)
- The level of participation in the discussion (25%)