Difference between revisions of "Physics of Soft and Biological Matter 1 WS 2013/2014"
(66 intermediate revisions by 3 users not shown) | |||
Line 4: | Line 4: | ||
:Lecture (2 SWS) and Tutorials (every 2nd week) | :Lecture (2 SWS) and Tutorials (every 2nd week) | ||
;Lecturer | ;Lecturer | ||
− | :Prof. Dr. [[Christian Holm]] and [http://www.pi2.uni-stuttgart.de/contact/index.php?article_id=80&id=cb2 Prof. Dr. Clemens Bechinger] (Lecture); Dr. [[Jens Smiatek]] (Tutorials) | + | :Prof. Dr. [[Christian Holm]] and [http://www.pi2.uni-stuttgart.de/contact/index.php?article_id=80&id=cb2 Prof. Dr. Clemens Bechinger] (Lecture); Dr. [[Jens Smiatek]] and [[Stefan Kesselheim]] (Tutorials) |
;Course language | ;Course language | ||
:English | :English | ||
;Location and Time | ;Location and Time | ||
− | + | :October 17th, 2013 - February 6th, 2014 | |
− | :Lecture: Thu, 14:00 - 15:30 (Seminar room ICP 1.079, Allmandring 3) | + | :Lecture: Thu, 14:00 - 15:30 (Seminar room ICP 1.079, Allmandring 3) |
+ | :Tutorials: Every second week on '''Thursday, 08:00-09:30''' in CIP pool 1.033, ICP, Allmandring 3 | ||
+ | |||
; Prerequisites | ; Prerequisites | ||
: B. Sc. 5. Semester or Master | : B. Sc. 5. Semester or Master | ||
+ | |||
+ | == Scope == | ||
+ | The lecture intends to give an overview about the physics behind soft and biological matter which has been established as a novel interdisciplinary research field over the last decades. Soft matter typically includes | ||
+ | easily deformable objects like colloids, polymers/polyelectrolytes, membranes, liquid crystals as well as vesicles and micelles. Most soft matter effects are driven by electrostatic, van-der-Waals, solute-solvent as well as | ||
+ | entropic interactions. Typical phenomena include order-disorder phase transitions or aggregation behavior. | ||
+ | The lecture will focus on the physical principles behind the observed effects. In addition, fundamental principles and theories like the DLVO- and the Poisson-Boltzmann theory will be introduced. | ||
+ | The interdisciplinary character of this research field is reflected by the presentation of experimental and theoretical work in addition to numerical simulation results. | ||
+ | |||
+ | == Recommended literature == | ||
+ | |||
+ | * Pierre Gilles de Gennes: [http://rmp.aps.org/pdf/RMP/v64/i3/p645_1 ''Soft matter''], Rev. Mod. Phys. '''64''', 645 (1992) | ||
+ | * Richard A. L. Jones: ''Soft Condensed Matter'', Oxford University Press (2002) | ||
+ | * D. Fennell Evans and Hakan Wennerström: ''The Colloidal Domain - Where Physics, Chemistry, Biology, and Technology Meet'', Wiley-VCH (1999) | ||
+ | * Robert J. Hunter: ''Foundations of Colloid Science'', Oxford University Press (2002) | ||
+ | * Gert R. Strobl: ''The Physics of Polymers: Concepts for Understanding Their Structures and Behavior'', Springer (2007) | ||
+ | * Jean-Pierre Hansen and Ian R. McDonald: ''Theory of Simple Liquids'', Academic Press (2006) | ||
+ | * Mohamed Daoud and Claudine E. Williams (Eds.): ''Soft Matter Physics'', Springer (1999) | ||
+ | * Pierre Gilles de Gennes: ''Scaling Concepts in Polymer Physics'', Cornell University Press (1979) | ||
+ | * Ian W. Hamley: ''Introduction to Soft Matter'', J. Wiley (2000). | ||
+ | * Maurice Kleman and Oleg G. Laverntovich: ''Soft Matter Physics: An Introduction'', Springer (2003) | ||
+ | * Jacob Israelachvili: ''Intermolecular and Surface Forces'', Academic Press (1992) | ||
+ | * Michael Rubinstein and Ralph H. Colby: ''Polymer Physics'', Oxford University Press (2003) | ||
+ | * Gerhard Nägele: [http://hera.physik.uni-konstanz.de/igk/news/workshops/Naegele.pdf ''Lecture Notes: The Physics of Colloidal Soft Matter''] (2004) | ||
+ | |||
+ | == Course Material == | ||
+ | |||
+ | {| class="wikitable" | ||
+ | |- | ||
+ | !Date !! Subject !! Lecturer || Ressources | ||
+ | |||
+ | |- | ||
+ | |17.10.2013 || Motivation and historical overview || Bechinger || {{Download|Soft_Matter1_WS1314_lecture1_17_10_13.pdf|Lecture Notes}} and [[Media:Lecture_A.pptx|Slides]] | ||
+ | |||
+ | |- | ||
+ | |24.10.2013 || Many-particle systems: description of structural properties || Holm || {{Download|Soft_Matter1_WS1314_lecture1_24_10_13.pdf|Lecture Notes}} | ||
+ | |||
+ | |- | ||
+ | |31.10.2013 || Pair interactions between dispersed particles || Bechinger || {{Download|Soft_Matter1_WS1314_lecture1_31_10_13.pdf|Lecture Notes}} {{Download|Soft_Matter1_WS1314_lecture1_24_10_13_ppt.pdf|Slides}} | ||
+ | |||
+ | |- | ||
+ | |07.11.2013 || Poisson-Boltzmann theory || Holm || | ||
+ | {{Download|Soft_Matter1_WS1314_lecture1_07_11_13.pdf|Lecture Notes}} | ||
+ | |||
+ | |- | ||
+ | |14.11.2013 || Introduction to polymer physics || Holm || | ||
+ | {{Download|Soft_Matter1_WS1314_lecture5_14_11_13.pdf|Lecture Notes}} | ||
+ | |||
+ | |- | ||
+ | |21.11.2013 || Polyelectrolytes I || Holm || | ||
+ | {{Download|Soft_Matter1_WS1314_lecture5_21_11_13.pdf|Lecture Notes}} | ||
+ | |||
+ | |- | ||
+ | |28.11.2013 || Polyelectrolytes II || Holm || | ||
+ | {{Download|Soft_Matter1_WS1314_lecture5_21_11_13.pdf|Lecture Notes}} | ||
+ | (Continued from 21.11.2013) | ||
+ | |||
+ | |- | ||
+ | |05.12.2013 || Experimental techniques || Bechinger || | ||
+ | {{Download|Soft_Matter1_WS1314_lecture7_05_12.pdf|Slides}} | ||
+ | {{Download|Soft_Matter1_WS1314_lecture7_05_12_notes.pdf|Notes}} | ||
+ | |- | ||
+ | |12.12.2013 || Phase transitions || Bechinger, Holm || | ||
+ | {{Download|Soft_Matter1_WS1314_lecture7_12_12_notes.pdf|Lecture Notes}} | ||
+ | |- | ||
+ | |19.12.2013 || Xmas lecture: Soft matter food science || Bechinger, Holm || | ||
+ | {{Download|FoodXMas.pdf|Lecture Notes}} | ||
+ | |||
+ | |- | ||
+ | |09.01.2014 || Phase transitions II || Holm || | ||
+ | {{Download|Lecture10_09_01_notes.pdf|Lecture Notes}} | ||
+ | |||
+ | |- | ||
+ | |16.01.2014 || Depletion interactions I || Bechinger || | ||
+ | {{Download|Soft_Matter1_WS1314_lecture1_16_01_14.pdf|Slides}} {{Download|Soft_Matter1_WS1314_lecture1_16_01_14_ppt.pdf|Lecture Notes}} | ||
+ | |||
+ | |- | ||
+ | |23.01.2014 || Depletion interactions II || Bechinger || | ||
+ | {{Download|Soft_Matter1_WS1314_lecture1_23_01_14_ppt.pdf|Lecture Notes}} | ||
+ | {{Download|Slides_230114.pdf|Slides}} | ||
+ | |||
+ | |- | ||
+ | |30.01.2014 || Biological soft matter || Holm || | ||
+ | {{Download|Vorlesung14_30.1.2014.pdf|Slides}} | ||
+ | |||
+ | |- | ||
+ | |06.02.2014 || Lab tour || Bechinger || | ||
+ | |} | ||
+ | |||
+ | == Additional Material == | ||
+ | <bibentry filelink=yes>deserno01c</bibentry> | ||
+ | <bibentry filelink=yes>alexander84a</bibentry> | ||
+ | <bibentry filelink=yes>aubouy03a</bibentry> | ||
+ | <bibentry filelink=no>barrat03a</bibentry> | ||
+ | {{Download|barrat-hansen-vdw.pdf|Extract on van-der-Waals equation of state}} | ||
+ | |||
+ | == Work sheets == | ||
+ | *'''[[Media:Tutorial_1.zip|Worksheet 1 (zip-File with work sheet and literature)]]''': ''1D-Random walk, Langevin equation and atomistic revolution'' | ||
+ | ** {{DownloadExt|/teaching/2012-ws-sim_methods/slides07.pdf|Slides: Simulating Brownian Motion}} | ||
+ | *'''[[Media:Tutorial_2.zip|Worksheet 2 (zip-File with work sheet and literature)]]''': ''Pair distribution functions and colloids in suspense'' | ||
+ | ** [http://www.st-andrews.ac.uk/~bds2/ltsn/Edinburgh/lennard-jones/index.html 2D-Molecular Dynamics simulation of Lennard-Jones particles (Java-Applet)] | ||
+ | ** [http://igitur-archive.library.uu.nl/chem/2007-0723-200250/lekke_96_colloidsinsuspense.pdf ''Colloids in suspense'' by Poon et al.; ''Physics World'' '''9''', 27, (1996)] | ||
+ | *'''[[Media:Tutorial_3.zip|Worksheet 3 (zip-File with work sheet and literature)]]''': ''Electrostatic screening and polymer properties'' | ||
+ | *'''[[Media:Tutorial_4.pdf|Worksheet 4 ]]''': ''Gibbs-Donnan equilibrium and the van-der-Waals equation of state'' | ||
+ | *'''[[Media:Tutorial_5.zip|Worksheet 5 (zip-File with work sheet and literature)]]''': ''Microscopy'' | ||
+ | *'''[[Media:tutorial_6.pdf|Worksheet 6 ]]''': ''Phase transitions and solubilities'' | ||
+ | *'''[[Media:tutorial_7.pdf|Worksheet 7 ]]''': ''Depletion interactions and Total Internal Reflection Microscopy'' {{Download|tirm.dat}} |
Latest revision as of 18:51, 30 January 2014
Overview
- Type
- Lecture (2 SWS) and Tutorials (every 2nd week)
- Lecturer
- Prof. Dr. Christian Holm and Prof. Dr. Clemens Bechinger (Lecture); Dr. Jens Smiatek and Stefan Kesselheim (Tutorials)
- Course language
- English
- Location and Time
- October 17th, 2013 - February 6th, 2014
- Lecture: Thu, 14:00 - 15:30 (Seminar room ICP 1.079, Allmandring 3)
- Tutorials: Every second week on Thursday, 08:00-09:30 in CIP pool 1.033, ICP, Allmandring 3
- Prerequisites
- B. Sc. 5. Semester or Master
Scope
The lecture intends to give an overview about the physics behind soft and biological matter which has been established as a novel interdisciplinary research field over the last decades. Soft matter typically includes easily deformable objects like colloids, polymers/polyelectrolytes, membranes, liquid crystals as well as vesicles and micelles. Most soft matter effects are driven by electrostatic, van-der-Waals, solute-solvent as well as entropic interactions. Typical phenomena include order-disorder phase transitions or aggregation behavior. The lecture will focus on the physical principles behind the observed effects. In addition, fundamental principles and theories like the DLVO- and the Poisson-Boltzmann theory will be introduced. The interdisciplinary character of this research field is reflected by the presentation of experimental and theoretical work in addition to numerical simulation results.
Recommended literature
- Pierre Gilles de Gennes: Soft matter, Rev. Mod. Phys. 64, 645 (1992)
- Richard A. L. Jones: Soft Condensed Matter, Oxford University Press (2002)
- D. Fennell Evans and Hakan Wennerström: The Colloidal Domain - Where Physics, Chemistry, Biology, and Technology Meet, Wiley-VCH (1999)
- Robert J. Hunter: Foundations of Colloid Science, Oxford University Press (2002)
- Gert R. Strobl: The Physics of Polymers: Concepts for Understanding Their Structures and Behavior, Springer (2007)
- Jean-Pierre Hansen and Ian R. McDonald: Theory of Simple Liquids, Academic Press (2006)
- Mohamed Daoud and Claudine E. Williams (Eds.): Soft Matter Physics, Springer (1999)
- Pierre Gilles de Gennes: Scaling Concepts in Polymer Physics, Cornell University Press (1979)
- Ian W. Hamley: Introduction to Soft Matter, J. Wiley (2000).
- Maurice Kleman and Oleg G. Laverntovich: Soft Matter Physics: An Introduction, Springer (2003)
- Jacob Israelachvili: Intermolecular and Surface Forces, Academic Press (1992)
- Michael Rubinstein and Ralph H. Colby: Polymer Physics, Oxford University Press (2003)
- Gerhard Nägele: Lecture Notes: The Physics of Colloidal Soft Matter (2004)
Course Material
Date | Subject | Lecturer | Ressources |
---|---|---|---|
17.10.2013 | Motivation and historical overview | Bechinger | Lecture Notes (181 KB) and Slides |
24.10.2013 | Many-particle systems: description of structural properties | Holm | Lecture Notes (1.19 MB) |
31.10.2013 | Pair interactions between dispersed particles | Bechinger | Lecture Notes (696 KB) Slides (3.33 MB) |
07.11.2013 | Poisson-Boltzmann theory | Holm |
Lecture Notes (2.36 MB) |
14.11.2013 | Introduction to polymer physics | Holm |
Lecture Notes (7.79 MB) |
21.11.2013 | Polyelectrolytes I | Holm |
Lecture Notes (3.45 MB) |
28.11.2013 | Polyelectrolytes II | Holm |
Lecture Notes (3.45 MB) (Continued from 21.11.2013) |
05.12.2013 | Experimental techniques | Bechinger | |
12.12.2013 | Phase transitions | Bechinger, Holm |
Lecture Notes (485 KB) |
19.12.2013 | Xmas lecture: Soft matter food science | Bechinger, Holm |
Lecture Notes (4.15 MB) |
09.01.2014 | Phase transitions II | Holm |
Lecture Notes (130 KB) |
16.01.2014 | Depletion interactions I | Bechinger |
Slides (1.68 MB) Lecture Notes (262 KB) |
23.01.2014 | Depletion interactions II | Bechinger |
Lecture Notes (25 KB) Slides (3.61 MB) |
30.01.2014 | Biological soft matter | Holm |
Slides (4.34 MB) |
06.02.2014 | Lab tour | Bechinger |
Additional Material
-
Markus Deserno, Christian Holm.
Cell-model and Poisson-Boltzmann-theory: A brief introduction.
In Electrostatic Effects in Soft Matter and Biophysics, pages 27–50. Edited by C. Holm, P. Kékicheff, R. Podgornik. Part of NATO Science Series II - Mathematics, Physics and Chemistry, volume 46.
Kluwer Academic Publishers, Dordrecht, Nl, 2001.
[PDF] (262 KB) [DOI]
-
S. Alexander, P. M. Chaikin, P. Grant, G. J. Morales, P. Pincus, D. Hone.
Charge Renormalization, Osmotic-Pressure, And Bulk Modulus Of Colloidal Crystals - Theory.
The Journal of Chemical Physics 80(11):5776–5781, 1984.
[PDF] (706 KB)
-
M. Aubouy, Emmanuel Trizac, Lyderic Bocquet.
Effective charge versus bare charge: an analytical estimate for colloids in the infinite dilution limit.
Journal of Physics A: Mathematical and General 36(22):5835–5840, 2003.
[PDF] (106 KB)
-
Jean-Louis Barrat, Jean-Pierre Hansen.
Basic Concepts fo Simple and Complex Liquids.
Cambridge University Press, 2003. ISBN: 0-521-78953-2.
Extract on van-der-Waals equation of state (2.24 MB)
Work sheets
- Worksheet 1 (zip-File with work sheet and literature): 1D-Random walk, Langevin equation and atomistic revolution
- Slides: Simulating Brownian Motion (1.54 MB)
- Worksheet 2 (zip-File with work sheet and literature): Pair distribution functions and colloids in suspense
- Worksheet 3 (zip-File with work sheet and literature): Electrostatic screening and polymer properties
- Worksheet 4 : Gibbs-Donnan equilibrium and the van-der-Waals equation of state
- Worksheet 5 (zip-File with work sheet and literature): Microscopy
- Worksheet 6 : Phase transitions and solubilities
- Worksheet 7 : Depletion interactions and Total Internal Reflection Microscopy tirm.dat (2.76 MB)