Bibliography

[1]

Lilit Axner. EuroHPC JU infrastructures and their use in science and technology. In Lilit Axner, editor, Proceedings of the First EuroHPC user day, volume 240 of Procedia Computer Science, 110–115. Elsevier, 2024. doi:10.1016/j.procs.2024.07.014.

[2]

João Bispo, Jorge G. Barbosa, Pedro Filipe Silva, Cristian Morales, Mirko Myllykoski, Pedro Ojeda-May, Milosz Bialczak, Mariusz Uchronski, Adam Wlodarczyk, Peter Wauligmann, Ezhilmathi Krishnasamy, Sebastien Varrette, and Sebastian Lührs. Best practice guide - modern accelerators. Working paper version 1.0, PRACE, June 2021. doi:10.5281/zenodo.5839488.

[3]

Bob Dröge, Victor Holanda Rusu, Kenneth Hoste, Caspar van Leeuwen, Alan O'Cais, and Thomas Röblitz. EESSI: a cross-platform ready-to-use optimised scientific software stack. Software: Practice and Experience, 53(1):176–210, January 2023. doi:10.1002/spe.3075.

[4]

Todd Gamblin, Matthew LeGendre, Michael R. Collette, Gregory L. Lee, Adam Moody, Bronis R. de Supinski, and Scott Futral. The Spack package manager: bringing order to HPC software chaos. In Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis. New York, NY, USA, 2015. Association for Computing Machinery. doi:10.1145/2807591.2807623.

[5]

Markus Geimer, Kenneth Hoste, and Robert McLay. Modern scientific software management using EasyBuild and Lmod. In 2014 First International Workshop on HPC User Support Tools, 41–51. 2014. doi:10.1109/HUST.2014.8.

[6]

Jean-Noël Grad, Alexander Reinauer, Christian Holm, and Rudolf Weeber. Pathway to exascale: experiences in adopting more scalable algorithms in ESPResSo. In deRSE24 – 4th conference for Research Software Engineering in Germany. Zenodo, March 2024. doi:10.5281/zenodo.10806020.

[7]

Jean-Noël Grad and Rudolf Weeber. Report on the current scalability of ESPResSo and the planned work to extend it. MultiXscale Deliverable 2.1, EuroHPC Centre of Excellence MultiXscale, September 2023. doi:10.5281/zenodo.8420222.

[8]

David Gugerli and Ricky Wichum. Supercomputing and the emergence of digital federalism. In Paolo Bory and Daniela Zetti, editors, Digital Federalism: Information, Institutions, Infrastructures (1950–2000), volume 49 of Itinera, pages 117–140. Schwabe Verlag, 2022. doi:10.3929/ethz-b-000536324.

[9]

Steffen Hirschmann. Load-Balancing for Scalable Simulations with Large Particle Numbers. PhD thesis, University of Stuttgart, July 2021. doi:10.18419/opus-11796.

[10]

Steffen Hirschmann, Malte Brunn, Michael Lahnert, Colin W. Glass, Miriam Mehl, and Dirk Pflüger. Load balancing with p4est for short-range molecular dynamics with ESPResSo. In Sanzio Bassini, Marco Danelutto, Patrizio Dazzi, Gerhard R. Joubert, and Frans Peters, editors, Parallel Computing is Everywhere, volume 32 of Advances in Parallel Computing, pages 455–464. IOS Press, Amsterdam, Netherlands, March 2018. doi:10.3233/978-1-61499-843-3-455.

[11]

Steffen Hirschmann, Colin W. Glass, and Dirk Pflüger. Enabling unstructured domain decompositions for inhomogeneous short-range molecular dynamics in ESPResSo. The European Physical Journal Special Topics, 227(14):1779–1788, March 2019. doi:10.1140/epjst/e2019-800159-0.

[12]

Steffen Hirschmann, Andreas Kronenburg, Colin W. Glass, and Dirk Pflüger. Load-balancing for large-scale soot particle agglomeration simulations. In Ian Foster, Gerhard R. Joubert, Luděk Kučera, Wolfgang E. Nagel, and Frans Peters, editors, Parallel Computing: Technology Trends, volume 36 of Advances in Parallel Computing, pages 147–156. IOS Press, Amsterdam, Netherlands, March 2020. doi:10.3233/APC200035.

[13]

Steffen Hirschmann, Andreas Kronenburg, Colin W. Glass, and Dirk Pflüger. Project report on “load-balancing for large-scale soot particle agglomeration simulations” (reprint). In Wolfgang E. Nagel, Dietmar H. Kröner, and Michael M. Resch, editors, High Performance Computing in Science and Engineering '20, pages 513–525. Springer International Publishing, Cham, Switzerland, January 2022. doi:10.1007/978-3-030-80602-6_34.

[14]

Steffen Hirschmann, Michael Lahnert, Carolin Schober, Malte Brunn, Miriam Mehl, and Dirk Pflüger. Load-balancing and spatial adaptivity for coarse-grained molecular dynamics applications. In Wolfgang E. Nagel, Dietmar H. Kröner, and Michael M. Resch, editors, High Performance Computing in Science and Engineering '18, pages 409–423. Springer International Publishing, Cham, Switzerland, June 2019. doi:10.1007/978-3-030-13325-2_26.

[15]

Kenneth Hoste, Jens Timmerman, Andy Georges, and Stijn De Weirdt. EasyBuild: building software with ease. In Proceedings of the 2012 SC Companion: High Performance Computing, Networking Storage and Analysis. Los Alamitos, California, USA, November 2012. IEEE. doi:10.1109/SC.Companion.2012.81.

[16]

Dorian Krause. Cyberattack against supercomputers. JSC News, June 2020. URL: https://www.john-von-neumann-institut.de/en/news/announcements/2020/2020-06-cyberattack-e.

[17]

Michael Kuron, Philipp Stärk, Christian Holm, and Joost de Graaf. Hydrodynamic mobility reversal of squirmers near flat and curved surfaces. Soft Matter, 15(29):5908–5920, July 2019. doi:10.1039/C9SM00692C.

[18]

Gaëtan Leurent and Thomas Peyrin. SHA-1 is a shambles: first chosen-prefix collision on SHA-1 and application to the PGP Web of Trust. In Proceedings of the 29th USENIX Security Symposium, 1839–1856. USENIX Association, August 2020. URL: https://www.usenix.org/conference/usenixsecurity20/presentation/leurent.

[19]

Marc Stevens, Arjen Lenstra, and Benne de Weger. Chosen-prefix collisions for MD5 and colliding X.509 certificates for different identities. In Moni Naor, editor, Advances in Cryptology - EUROCRYPT 2007, number 4515 in Lecture Notes in Computer Science, 1–22. Springer Berlin Heidelberg, 2007. doi:10.1007/978-3-540-72540-4_1.

[20]

Marc Stevens, Alexander Sotirov, Jacob Appelbaum, Arjen Lenstra, David Molnar, Dag Arne Osvik, and Benne de Weger. Short chosen-prefix collisions for MD5 and the creation of a rogue CA certificate. In Shai Halevi, editor, Advances in Cryptology - CRYPTO 2009, number 5677 in Lecture Notes in Computer Science, 55–69. Springer Berlin Heidelberg, 2009. doi:10.1007/978-3-642-03356-8_4.

[21]

Arndt Wagner, Elissa Eggenweiler, Felix Weinhardt, Zubin Trivedi, David Krach, Christoph Lohrmann, Kartik Jain, Nikolaos Karadimitriou, Carina Bringedal, Paul Voland, Christian Holm, Holger Class, Holger Steeb, and Iryna Rybak. Permeability estimation of regular porous structures: a benchmark for comparison of methods. Transport in Porous Media, 138(1):1–23, April 2021. doi:10.1007/s11242-021-01586-2.

[22]

Johannes Zeman, Svyatoslav Kondrat, and Christian Holm. Bulk ionic screening lengths from extremely large-scale molecular dynamics simulations. Chemical Communications, 56(100):15635–15638, December 2020. doi:10.1039/d0cc05023g.

[23]

Johannes Zeman, Svyatoslav Kondrat, and Christian Holm. Ionic screening in bulk and under confinement. The Journal of Chemical Physics, 155(20):204501, November 2021. doi:10.1063/5.0069340.

[24]

Li Zhong, Oleksandr Shcherbakov, Dennis Hoppe, Michael Resch, and Bastian Koller. Towards seamless execution of deep learning application on heterogeneous HPC systems. In Gintautas Dzemyda, Jolita Bernatavičienė, and Janusz Kacprzyk, editors, Data Science in Applications, volume 1084 of Studies in Computational Intelligence, pages 233–252. Springer International Publishing, Cham, Switzerland, 2023. doi:10.1007/978-3-031-24453-7_11.

[25]

Huan Zhou, José Gracia, and Ralf Schneider. MPI collectives for multi-core clusters: optimized performance of the hybrid MPI+MPI parallel codes. In Workshop Proceedings of the 48th International Conference on Parallel Processing. New York, New York, USA, August 2019. ACM. doi:10.1145/3339186.3339199.

[26]

Codecov team. Bash uploader security update. April 2021. URL: https://about.codecov.io/security-update/.

[27]

HPCG. June 2020 HPCG results (High Performance Conjugate Gradients Benchmark project). In High Performance Computing 35th International Conference, ISC High Performance 2020. June 2020. URL: https://www.hpcg-benchmark.org/custom/index.html%3Flid=155&slid=303.html.

[28]

HPCG. November 2020 HPCG results (High Performance Conjugate Gradients Benchmark project). In International Conference for High Performance Computing, Networking, Storage, and Analysis. November 2020. URL: https://www.hpcg-benchmark.org/custom/index.html%3Flid=155&slid=307.html.

[29]

Members of Fortissimo Consortium, editor. Fortissimo Success Stories. EPCC and Arctur, Edinburgh, United Kingdom and Nova Gorica, Slovenia, 6th edition, January 2019. ISBN 978-961-94587-0-9. URL: https://www.ff4eurohpc.eu/mma/Fortissimo_SS_Booklet_web.pdf/2020101509292649/1602746967.

[30]

Members of EuroCC Consortium, editor. EuroCC Success Stories. HLRS, Stuttgart, Germany, 1st edition, May 2023. URL: https://www.eurocc-access.eu/wp-content/uploads/2023/07/EuroCC_booklet_2023_final.pdf.

[31]

Members of EuroCC 2 Consortium and CASTIEL 2 Consortium, editors. EuroCC Success Stories. HLRS, Stuttgart, Germany, 1st edition, September 2024. URL: https://www.eurocc-access.eu/wp-content/uploads/2024/10/EuroCC2_Booklet2024_v1.0.pdf.

[32]

Members of FF4EuroHPC Consortium, editor. FF4EuroHPC Success Stories. Arctur, Nova Gorica, Slovenia, 1st edition, November 2022. ISBN 978-961-94587-3-0. URL: https://www.ff4eurohpc.eu/mma/FF4HPC_booklet_spreads-web.pdf/2023013117273747/1675182457.